Flow Cytometry from Fundamentals to Advanced Applications

Whether you're working in clinical diagnostics, therapeutic development, or research applications, this training provides the technical depth and FDA regulatory awareness essential for success in today's competitive biotech environment.

Transform Your Career

  • From immunophenotyping to multi-parameter assays
  • Master assay validation, documentation, and audit readiness
  • Prepare for IND/BLA submissions and lead high-impact flow cytometry programs

Build Expertise from the Ground Up
Core concepts:
  • Principles of Flow Cytometry: Hydrodynamic focusing, optics, fluidics, electronics, and fluorochrome behavior
  • Fluorophore Spectral Properties: Understanding excitation/emission profiles, Stokes shift, and spillover
  • Panel Design Fundamentals: Antigen density, co-expression patterns, fluorochrome brightness, and spectral separation
  • Compensation & Spectral Unmixing: Theory and best practices across conventional and spectral cytometers
  • Gating Strategies: Boolean logic, hierarchical gating, exclusion/inclusion gating, and population identification
  • Quality Control & Assurance: Daily instrument QC, performance metrics (e.g., CVs, rCVs, stain index), and troubleshooting
  • Clinical & Regulatory Requirements: CLIA, CAP, and FDA expectations for method validation, documentation, and data integrity
Software training:
  • FlowJo for gating, panel design, and data analysis
Technical skills:
  • Instrument Setup & Calibration: PMT voltage optimization, laser alignment, and baseline setup using beads or reference controls
  • Multicolor Panel Design: Designing 6–20+ color panels for immunophenotyping, cytokine profiling, MRD, and CAR expression
  • Sample Preparation & Staining: Surface, intracellular, viability, barcoding, and fixation/permeabilization protocols
  • Data Acquisition: Best practices for event collection, thresholding, doublet discrimination, and acquisition templates
  • Data Analysis: Manual gating, t-SNE/UMAP, FlowSOM, and high-dimensional analysis Assay Validation: For various regulatory environments like RUO, GMP, GLP, CLIA, IVD: Accuracy, precision, specificity, LOD/LOQ, linearity, and inter/intra-assay reproducibility
  • Documentation & Compliance: Creating SOPs, validation reports, assay protocols, and audit- ready records for FDA and CAP compliance


Real-World Applications
Specialized content for cell and gene therapy:
  • CAR-T monitoring
  • Minimal residual disease (MRD) analysis FDA & ICH Q2-aligned validation strategies
  • Build and validate GxP-compliant flow cytometry assays for identity, purity, viability, and potency testing with suggested pre-made panels
  • Design scalable, phase-appropriate assays to support IND, BLA, and commercial release of CGT products
  • Train staff on assay transfer, qualification, and lifecycle management for client- sponsored programs
  • Detect and quantify CAR expression, vector transduction efficiency, and residual impurities
  • Optimize high-parameter panel design (18–30+ colors) for in-process monitoring and QC lot release
Advanced techniques:
  • FACS sorting for single-cell workflows Companion diagnostics development
  • ML tools (tSNE, UMAP) for automated classification
Format

Live Virtual

Starting date

October 14

Duration

6 Weeks:
Different Lectures every Tuesday and Thursday

Early Bird Price

$2040
$2400 Regular

Accreditation

CMLE Credit Granted by ASCP

Accreditation

12 Credits of CMLE Hours

Write your awesome label here.

Live Sessions

Engage with our SME instructor and other professionals in real-time.

Assessments

Your knowledge will be activated and added to your toolkit through assessments and discussions.

PowerPoints Versions Included

Access the learning material in traditional PPT versions for self-paced reviews.

Professional Networking

Meet other like-minded professionals during courses and our communities.

Course Components

Christian Aguilera-Sandoval, PhD

Founder and Principal Trainer

Professional Background
Dr. Christian Aguilera-Sandoval is the Founder and Principal Trainer at SuperNova Flow Cytometry and a seasoned Executive Scientific and Medical Affairs leader with deep expertise in flow cytometry, cell and gene therapy, and analytical development. He has held key roles at industry-leading companies including FlowJo and Becton Dickinson before advancing to his current consulting practice. Dr. Aguilera- Sandoval earned his Ph.D. in Immunology from UCLA and conducted postdoctoral research at the University of North Carolina at Chapel Hill.


Recognitions
Throughout his career, he has been celebrated for both scholarly achievements and educational contributions. Dr. Aguilera-Sandoval was honored for his teaching excellence with a Certificate of Recognition from the California State Assembly, a Scholastic Achievement Award from the California State Senate, and the U.S. President’s Education Award, signed by President George W. Bush. Dr. Aguilera-Sandoval has previously taught flow cytometry at UCLA, UNC-Chapel Hill, NIH, NCI and at the US Naval Academy. His pioneering flow cytometry research has been published in top-tier journals such as Nature and Nature Biotechnology, and he has been invited to speak at various national and international flow cytometry and CGT conferences.

Flow Cytometry Expertise
Dr. Aguilera-Sandoval’s teaching approach emphasizes practical, hands-on proficiency. In the upcoming flow cytometry course, he will focus on:
  • Panel design to optimize multicolor assays
  • Instrument setup and quality control for reliable data
  • Data acquisition techniques for high-content studies
  • Basic and advanced analysis methods for accurate multiparameter cytometry interpretation

With a blend of industry leadership, academic accomplishment, and proven instructional skill, Dr. Aguilera-Sandoval delivers an engaging and informative experience. His track record of practical expertise ensures that course participants gain valuable, immediately applicable skills in flow cytometry, tailored for both industry and academic workflows. All courses are ASCP and ASC accredited and offer CMLE credits that fulfill continuing education requirements for SCYM(ASCP) , CLIA and CAP compliance as well as provide a roadmap to prepare for the SCYM (ASP) certification"